Information for LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer (Motif 200)

A T G C T A C G A G T C G A C T T G C A C T G A G A C T A C G T C T G A T C A G
Reverse Opposite:
A G T C G A C T T G C A C T G A G A C T A C G T C T G A T C A G A T G C T A C G
p-value:1e-2135
log p-value:-4.918e+03
FDR:NA
Information Content per bp:1.603
Number of Target Sequences with motif7165.0
Percentage of Target Sequences with motif45.87%
Number of Background Sequences with motif4350.8
Percentage of Background Sequences with motif13.24%
Average Position of motif in Targets51.2 +/- 24.1bp
Average Position of motif in Background50.5 +/- 34.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.24
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:NGCTAATTAG
NGCTAATTAG
 A T G C T A C G A G T C G A C T T G C A C T G A G A C T A C G T C T G A T C A G
A T G C T A C G A G T C G A C T T G C A C T G A G A C T A C G T C T G A T C A G

LHX6/MA0658.1/Jaspar

Match Rank:2
Score:0.97
Offset:1
Orientation:reverse strand
Alignment:NGCTAATTAG-
-NCTAATTAGT
 A T G C T A C G A G T C G A C T T G C A C T G A G A C T A C G T C T G A T C A G A C G T
A C G T T C A G A G T C G A C T T C G A T C G A A C G T A G C T T C G A T C A G A G C T

dsc-1/MA0919.1/Jaspar

Match Rank:3
Score:0.97
Offset:1
Orientation:forward strand
Alignment:NGCTAATTAG-
-ACTAATTAGT
 A T G C T A C G A G T C G A C T T G C A C T G A G A C T A C G T C T G A T C A G A C G T
A C G T T C G A A G T C G A C T C T G A C T G A A G C T G A C T C T G A T C A G A G C T

ap/dmmpmm(Noyes_hd)/fly

Match Rank:4
Score:0.97
Offset:0
Orientation:forward strand
Alignment:NGCTAATTAG
NGCTAATTAG
 A T G C T A C G A G T C G A C T T G C A C T G A G A C T A C G T C T G A T C A G
A T G C T C A G G A T C C G A T C G T A C G T A A C G T A C G T C T G A C T A G

EMX2/MA0886.1/Jaspar

Match Rank:5
Score:0.97
Offset:1
Orientation:forward strand
Alignment:NGCTAATTAG-
-GCTAATTAGC
 A T G C T A C G A G T C G A C T T G C A C T G A G A C T A C G T C T G A T C A G A C G T
A C G T T C A G A T G C G A C T G T C A C G T A A C G T A C G T C G T A T C A G A T G C

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:6
Score:0.97
Offset:1
Orientation:reverse strand
Alignment:NGCTAATTAG
-NCTAATTA-
 A T G C T A C G A G T C G A C T T G C A C T G A G A C T A C G T C T G A T C A G
A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T

En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer

Match Rank:7
Score:0.97
Offset:0
Orientation:forward strand
Alignment:NGCTAATTAG
NDCTAATTAS
 A T G C T A C G A G T C G A C T T G C A C T G A G A C T A C G T C T G A T C A G
T C A G C T A G A T G C G A C T T G C A C G T A A G C T A C G T C T G A T A C G

Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer

Match Rank:8
Score:0.96
Offset:0
Orientation:forward strand
Alignment:NGCTAATTAG
NNYTAATTAR
 A T G C T A C G A G T C G A C T T G C A C T G A G A C T A C G T C T G A T C A G
C G T A C A T G A G T C G A C T T G C A C G T A A C G T A C G T C T G A T C A G

VSX2/MA0726.1/Jaspar

Match Rank:9
Score:0.96
Offset:2
Orientation:forward strand
Alignment:NGCTAATTAG
--CTAATTAG
 A T G C T A C G A G T C G A C T T G C A C T G A G A C T A C G T C T G A T C A G
A C G T A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G

EMX1/MA0612.2/Jaspar

Match Rank:10
Score:0.96
Offset:2
Orientation:forward strand
Alignment:NGCTAATTAG
--CTAATTAG
 A T G C T A C G A G T C G A C T T G C A C T G A G A C T A C G T C T G A T C A G
A C G T A C G T A T G C G A C T G T C A C G T A A C G T A C G T C G T A T A C G