Information for Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer (Motif 199)

C G T A C G T A A G C T G A C T T G C A G T C A A C G T A G C T C T G A T C A G
Reverse Opposite:
A G T C G A C T T C G A C G T A A C G T A C G T C T G A T C G A G C A T G C A T
p-value:1e-5287
log p-value:-1.217e+04
FDR:NA
Information Content per bp:1.650
Number of Target Sequences with motif16578.0
Percentage of Target Sequences with motif55.47%
Number of Background Sequences with motif4397.9
Percentage of Background Sequences with motif16.00%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:ADBTAATTAR
ADBTAATTAR
 C G T A C G T A A G C T G A C T T G C A G T C A A C G T A G C T C T G A T C A G
C G T A C G T A A G C T G A C T T G C A G T C A A C G T A G C T C T G A T C A G

Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer

Match Rank:2
Score:0.98
Offset:0
Orientation:forward strand
Alignment:ADBTAATTAR
NNYTAATTAR
 C G T A C G T A A G C T G A C T T G C A G T C A A C G T A G C T C T G A T C A G
C G T A C A T G A G T C G A C T T G C A C G T A A C G T A C G T C T G A T C A G

dsc-1/MA0919.1/Jaspar

Match Rank:3
Score:0.97
Offset:1
Orientation:forward strand
Alignment:ADBTAATTAR-
-ACTAATTAGT
 C G T A C G T A A G C T G A C T T G C A G T C A A C G T A G C T C T G A T C A G A C G T
A C G T T C G A A G T C G A C T C T G A C T G A A G C T G A C T C T G A T C A G A G C T

Lhx4/MA0704.1/Jaspar

Match Rank:4
Score:0.97
Offset:2
Orientation:forward strand
Alignment:ADBTAATTAR
--TTAATTAA
 C G T A C G T A A G C T G A C T T G C A G T C A A C G T A G C T C T G A T C A G
A C G T A C G T A G C T G A C T T G C A C G T A A C G T A G C T C T G A T C G A

ro/MA0241.1/Jaspar

Match Rank:5
Score:0.96
Offset:3
Orientation:reverse strand
Alignment:ADBTAATTAR
---TAATTAG
 C G T A C G T A A G C T G A C T T G C A G T C A A C G T A G C T C T G A T C A G
A C G T A C G T A C G T A G C T G T C A C G T A A C G T A C G T C G T A T C A G

ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer

Match Rank:6
Score:0.96
Offset:2
Orientation:forward strand
Alignment:ADBTAATTAR--
--HTAATTARNN
 C G T A C G T A A G C T G A C T T G C A G T C A A C G T A G C T C T G A T C A G A C G T A C G T
A C G T A C G T G A C T A C G T C T G A C G T A A C G T A C G T C G T A T C A G T G A C C A T G

Exex/dmmpmm(Noyes_hd)/fly

Match Rank:7
Score:0.96
Offset:2
Orientation:reverse strand
Alignment:ADBTAATTAR--
--NTAATTACNN
 C G T A C G T A A G C T G A C T T G C A G T C A A C G T A G C T C T G A T C A G A C G T A C G T
A C G T A C G T A G C T A G C T C G T A C G T A A C G T A C G T C G T A T A G C G T A C A G T C

EMX2/MA0886.1/Jaspar

Match Rank:8
Score:0.96
Offset:1
Orientation:forward strand
Alignment:ADBTAATTAR-
-GCTAATTAGC
 C G T A C G T A A G C T G A C T T G C A G T C A A C G T A G C T C T G A T C A G A C G T
A C G T T C A G A T G C G A C T G T C A C G T A A C G T A C G T C G T A T C A G A T G C

EMX1/MA0612.2/Jaspar

Match Rank:9
Score:0.96
Offset:2
Orientation:forward strand
Alignment:ADBTAATTAR
--CTAATTAG
 C G T A C G T A A G C T G A C T T G C A G T C A A C G T A G C T C T G A T C A G
A C G T A C G T A T G C G A C T G T C A C G T A A C G T A C G T C G T A T A C G

exex/MA0224.1/Jaspar

Match Rank:10
Score:0.96
Offset:3
Orientation:reverse strand
Alignment:ADBTAATTAR
---TAATTAC
 C G T A C G T A A G C T G A C T T G C A G T C A A C G T A G C T C T G A T C A G
A C G T A C G T A C G T A G C T C G T A C G T A A C G T A C G T C G T A T A G C