Information for Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer (Motif 198)

A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C
Reverse Opposite:
T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A
p-value:1e-1514
log p-value:-3.487e+03
FDR:NA
Information Content per bp:1.753
Number of Target Sequences with motif2369.0
Percentage of Target Sequences with motif62.16%
Number of Background Sequences with motif3510.0
Percentage of Background Sequences with motif8.34%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:TAATTAGN
TAATTAGN
 A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C
A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C

VSX2/MA0726.1/Jaspar

Match Rank:2
Score:0.99
Offset:-1
Orientation:reverse strand
Alignment:-TAATTAGN
NTAATTAG-
 A C G T A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C
T G A C G A C T C G T A C T G A A C G T C G A T C T G A T C A G A C G T

VSX1/MA0725.1/Jaspar

Match Rank:3
Score:0.99
Offset:-1
Orientation:reverse strand
Alignment:-TAATTAGN
NTAATTAG-
 A C G T A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C
T G C A G A C T G T C A C T G A A G C T C A G T C T G A C T A G A C G T

ro/MA0241.1/Jaspar

Match Rank:4
Score:0.98
Offset:0
Orientation:reverse strand
Alignment:TAATTAGN
TAATTAG-
 A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C
A G C T G T C A C G T A A C G T A C G T C G T A T C A G A C G T

PRRX2/MA0075.3/Jaspar

Match Rank:5
Score:0.98
Offset:-1
Orientation:reverse strand
Alignment:-TAATTAGN
NTAATTAG-
 A C G T A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C
G A C T A G C T C G T A C G T A A C G T A C G T T C G A T C A G A C G T

LHX9/MA0701.2/Jaspar

Match Rank:6
Score:0.98
Offset:-1
Orientation:reverse strand
Alignment:-TAATTAGN
NTAATTAG-
 A C G T A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C
A G C T A G C T G T C A C G T A A C G T C A G T C T G A T C A G A C G T

EMX2/MA0886.1/Jaspar

Match Rank:7
Score:0.98
Offset:-2
Orientation:forward strand
Alignment:--TAATTAGN
GCTAATTAGC
 A C G T A C G T A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C
T C A G A T G C G A C T G T C A C G T A A C G T A C G T C G T A T C A G A T G C

EMX1/MA0612.2/Jaspar

Match Rank:8
Score:0.97
Offset:-1
Orientation:forward strand
Alignment:-TAATTAGN
CTAATTAG-
 A C G T A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C
A T G C G A C T G T C A C G T A A C G T A C G T C G T A T A C G A C G T

VAX2/MA0723.1/Jaspar

Match Rank:9
Score:0.97
Offset:-1
Orientation:reverse strand
Alignment:-TAATTAGN
NTAATTAG-
 A C G T A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C
T C A G G A C T G T C A G C T A C G A T C A G T C T G A T C A G A C G T

VAX1/MA0722.1/Jaspar

Match Rank:10
Score:0.97
Offset:-1
Orientation:reverse strand
Alignment:-TAATTAGN
NTAATTAG-
 A C G T A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C
C T A G G A C T G T C A G C T A C A G T C A G T C T G A T C A G A C G T