Information for Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer (Motif 197)

C G T A C A T G A G T C G A C T T G C A C G T A A C G T A C G T C T G A T C A G
Reverse Opposite:
A G T C G A C T T G C A G T C A A C G T A C G T C T G A T C A G G T A C G C A T
p-value:1e-287
log p-value:-6.628e+02
FDR:NA
Information Content per bp:1.599
Number of Target Sequences with motif2040.0
Percentage of Target Sequences with motif6.84%
Number of Background Sequences with motif819.7
Percentage of Background Sequences with motif2.77%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:NNYTAATTAR
NNYTAATTAR
 C G T A C A T G A G T C G A C T T G C A C G T A A C G T A C G T C T G A T C A G
C G T A C A T G A G T C G A C T T G C A C G T A A C G T A C G T C T G A T C A G

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.98
Offset:0
Orientation:forward strand
Alignment:NNYTAATTAR
ADBTAATTAR
 C G T A C A T G A G T C G A C T T G C A C G T A A C G T A C G T C T G A T C A G
C G T A C G T A A G C T G A C T T G C A G T C A A C G T A G C T C T G A T C A G

dsc-1/MA0919.1/Jaspar

Match Rank:3
Score:0.98
Offset:1
Orientation:forward strand
Alignment:NNYTAATTAR-
-ACTAATTAGT
 C G T A C A T G A G T C G A C T T G C A C G T A A C G T A C G T C T G A T C A G A C G T
A C G T T C G A A G T C G A C T C T G A C T G A A G C T G A C T C T G A T C A G A G C T

Lhx4/MA0704.1/Jaspar

Match Rank:4
Score:0.98
Offset:2
Orientation:reverse strand
Alignment:NNYTAATTAR
--TTAATTAA
 C G T A C A T G A G T C G A C T T G C A C G T A A C G T A C G T C T G A T C A G
A C G T A C G T A G C T G A C T T C G A C G T A C G A T A C G T C T G A T C G A

En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer

Match Rank:5
Score:0.98
Offset:0
Orientation:forward strand
Alignment:NNYTAATTAR
NDCTAATTAS
 C G T A C A T G A G T C G A C T T G C A C G T A A C G T A C G T C T G A T C A G
T C A G C T A G A T G C G A C T T G C A C G T A A G C T A C G T C T G A T A C G

DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer

Match Rank:6
Score:0.97
Offset:2
Orientation:reverse strand
Alignment:NNYTAATTAR--
--STAATTANNN
 C G T A C A T G A G T C G A C T T G C A C G T A A C G T A C G T C T G A T C A G A C G T A C G T
A C G T A C G T A T G C G A C T T C G A C G T A G C A T A G C T C T G A T A C G T A C G T A G C

VSX1/MA0725.1/Jaspar

Match Rank:7
Score:0.97
Offset:2
Orientation:forward strand
Alignment:NNYTAATTAR
--CTAATTAT
 C G T A C A T G A G T C G A C T T G C A C G T A A C G T A C G T C T G A T C A G
A C G T A C G T G A T C G A C T G T C A T C G A G A C T C A G T C T G A A C G T

Lim3/MA0195.1/Jaspar

Match Rank:8
Score:0.97
Offset:2
Orientation:forward strand
Alignment:NNYTAATTAR
--TTAATTA-
 C G T A C A T G A G T C G A C T T G C A C G T A A C G T A C G T C T G A T C A G
A C G T A C G T G A C T C G A T C T G A C G T A A C G T A C G T C T G A A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:9
Score:0.97
Offset:1
Orientation:reverse strand
Alignment:NNYTAATTAR
-NCTAATTA-
 C G T A C A T G A G T C G A C T T G C A C G T A A C G T A C G T C T G A T C A G
A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T

Lhx8/MA0705.1/Jaspar

Match Rank:10
Score:0.97
Offset:2
Orientation:reverse strand
Alignment:NNYTAATTAR
--CTAATTAG
 C G T A C A T G A G T C G A C T T G C A C G T A A C G T A C G T C T G A T C A G
A C G T A C G T A G T C A G C T T C G A C G T A A C G T A G C T C T G A T C A G