Information for Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer (Motif 182)

A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C
Reverse Opposite:
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G
p-value:1e-1514
log p-value:-3.487e+03
FDR:NA
Information Content per bp:1.731
Number of Target Sequences with motif5809.0
Percentage of Target Sequences with motif41.59%
Number of Background Sequences with motif4535.4
Percentage of Background Sequences with motif13.07%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:CTAATKGV
CTAATKGV
 A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C
A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

tup/MA0248.1/Jaspar

Match Rank:2
Score:0.93
Offset:0
Orientation:forward strand
Alignment:CTAATKGV
TTAATTG-
 A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C
G C A T C G A T C G T A C G T A A C G T C A G T C T A G A C G T

BARX1/MA0875.1/Jaspar

Match Rank:3
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:CTAATKGV
NTAATTGN
 A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C
A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C

CG11085/MA0171.1/Jaspar

Match Rank:4
Score:0.91
Offset:0
Orientation:forward strand
Alignment:CTAATKGV
TTAATTG-
 A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C
A G C T A C G T C G T A C G T A C G A T C A G T C T A G A C G T

lms/MA0175.1/Jaspar

Match Rank:5
Score:0.91
Offset:0
Orientation:forward strand
Alignment:CTAATKGV
TTAATTG-
 A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C
G A C T A C G T C G T A C G T A A C G T C A G T C T A G A C G T

CG11085/dmmpmm(Noyes_hd)/fly

Match Rank:6
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--CTAATKGV
NNTTAATTGG
 A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C
A C G T A G C T A G C T A C G T C G T A C G T A C G A T C A G T C T A G T A C G

NK7.1/MA0196.1/Jaspar

Match Rank:7
Score:0.90
Offset:0
Orientation:forward strand
Alignment:CTAATKGV
TTAATTG-
 A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C
G A C T A C G T C T G A C G T A C A G T C A G T C T A G A C G T

Isl1/MA1608.1/Jaspar

Match Rank:8
Score:0.90
Offset:-2
Orientation:reverse strand
Alignment:--CTAATKGV-
NNCTAATGGNN
 A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T
A C G T T C A G G A T C C G A T C T G A C G T A G A C T C A T G C T A G T G C A G A C T

BSX/MA0876.1/Jaspar

Match Rank:9
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:CTAATKGV
NTAATTGG
 A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C
A G C T A C G T C G T A C G T A A G C T A C G T C T A G A T C G

CG13424/dmmpmm(Noyes_hd)/fly

Match Rank:10
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--CTAATKGV
NNTTAATTGG
 A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C
C A T G G C A T G A C T A C G T C G T A C G T A A C G T C A G T C T A G A T C G