Information for Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer (Motif 174)

C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A
Reverse Opposite:
C G A T A C G T A C G T G C A T C G T A G A C T C A G T C T A G A T C G G A T C
p-value:1e-5974
log p-value:-1.376e+04
FDR:NA
Information Content per bp:1.686
Number of Target Sequences with motif22873.0
Percentage of Target Sequences with motif47.90%
Number of Background Sequences with motif7064.3
Percentage of Background Sequences with motif15.52%
Average Position of motif in Targets51.5 +/- 22.7bp
Average Position of motif in Background50.2 +/- 32.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:NCYAATAAAA
NCYAATAAAA
 C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A
C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.99
Offset:0
Orientation:forward strand
Alignment:NCYAATAAAA
NCYAATAAAA
 C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.98
Offset:1
Orientation:forward strand
Alignment:NCYAATAAAA-
-CYHATAAAAN
 C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T
A C G T T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:4
Score:0.97
Offset:0
Orientation:reverse strand
Alignment:NCYAATAAAA
CCYMATAAAA
 C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

PH0078.1_Hoxd13/Jaspar

Match Rank:5
Score:0.94
Offset:-2
Orientation:forward strand
Alignment:--NCYAATAAAA----
CTACCAATAAAATTCT
 A C G T A C G T C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

PH0057.1_Hoxb13/Jaspar

Match Rank:6
Score:0.94
Offset:-2
Orientation:forward strand
Alignment:--NCYAATAAAA----
AACCCAATAAAATTCG
 A C G T A C G T C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.93
Offset:0
Orientation:forward strand
Alignment:NCYAATAAAA
VGCCATAAAA
 C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A
T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:NCYAATAAAA
KGCCATAAAA
 C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A
C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:9
Score:0.92
Offset:0
Orientation:forward strand
Alignment:NCYAATAAAA
NGCAATTAAA
 C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

HOXA13/MA0650.2/Jaspar

Match Rank:10
Score:0.92
Offset:0
Orientation:forward strand
Alignment:NCYAATAAAA-
CCCAATAAAAC
 C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T
T G A C T A G C A G T C G T C A C G T A A C G T C T G A C T G A C G T A G T C A G T A C