Information for Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer (Motif 172)

T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A
Reverse Opposite:
G C A T C G A T G C A T G A C T G C T A A G C T C A T G C T A G A T G C A G T C
p-value:1e-4527
log p-value:-1.042e+04
FDR:NA
Information Content per bp:1.563
Number of Target Sequences with motif31064.0
Percentage of Target Sequences with motif51.11%
Number of Background Sequences with motif13860.1
Percentage of Background Sequences with motif23.95%
Average Position of motif in Targets50.9 +/- 24.4bp
Average Position of motif in Background50.0 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.30
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:VGCCATAAAA
VGCCATAAAA
 T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A
T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:2
Score:0.99
Offset:0
Orientation:reverse strand
Alignment:VGCCATAAAA
KGCCATAAAA
 T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A
C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.96
Offset:1
Orientation:forward strand
Alignment:VGCCATAAAA-
-CYHATAAAAN
 T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A A C G T
A C G T T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.95
Offset:0
Orientation:forward strand
Alignment:VGCCATAAAA
GGCMATGAAA
 T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A
C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.95
Offset:0
Orientation:forward strand
Alignment:VGCCATAAAA--
NGYCATAAAWCH
 T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A A C G T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer

Match Rank:6
Score:0.94
Offset:0
Orientation:forward strand
Alignment:VGCCATAAAA
GGYCATAAAW
 T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A
C T A G T C A G G A T C T G A C T C G A A C G T C T G A C G T A T G C A G C T A

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:7
Score:0.94
Offset:0
Orientation:forward strand
Alignment:VGCCATAAAA
NGCAATTAAA
 T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.93
Offset:0
Orientation:forward strand
Alignment:VGCCATAAAA
NCYAATAAAA
 T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A
C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

cad/MA0216.2/Jaspar

Match Rank:9
Score:0.93
Offset:0
Orientation:forward strand
Alignment:VGCCATAAAA-
GGCCATAAAAA
 T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A A C G T
C T A G T C A G A G T C G T A C C T G A A G C T C G T A C G T A C G T A C G T A G T C A

HOXA10/MA0899.1/Jaspar

Match Rank:10
Score:0.93
Offset:0
Orientation:forward strand
Alignment:VGCCATAAAA-
GGTAATAAAAA
 T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A A C G T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A