Information for Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer (Motif 169)

C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C
Reverse Opposite:
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A
p-value:1e-546
log p-value:-1.258e+03
FDR:NA
Information Content per bp:1.595
Number of Target Sequences with motif551.0
Percentage of Target Sequences with motif17.45%
Number of Background Sequences with motif330.9
Percentage of Background Sequences with motif0.75%
Average Position of motif in Targets50.6 +/- 22.9bp
Average Position of motif in Background50.4 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:TGATTRATGGCY
TGATTRATGGCY
 C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C
C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:2
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:TGATTRATGGCY
TGATTGATGA--
 C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C
C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T A C G T

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:3
Score:0.92
Offset:0
Orientation:forward strand
Alignment:TGATTRATGGCY
TGATKGATGR--
 C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C
C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G A C G T A C G T

LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer

Match Rank:4
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-TGATTRATGGCY
ATGATTRATG---
 A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C
C G T A C G A T C T A G G T C A G A C T C G A T C T A G C G T A A C G T C A T G A C G T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-TGATTRATGGCY
ATGATKGATGRC-
 A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:6
Score:0.90
Offset:-2
Orientation:reverse strand
Alignment:--TGATTRATGGCY
NNTGATTGATGNN-
 A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C
C G T A C G T A C G A T C A T G C G T A C G A T C A G T C A T G G T C A G A C T C T A G C T G A G A T C A C G T

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:7
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-TGATTRATGGCY
RTGATTKATRGN-
 A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C
C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:8
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:TGATTRATGGCY
TGATTTATGGCC
 C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C
C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:9
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:TGATTRATGGCY
TGATTTATGGCC
 C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:10
Score:0.84
Offset:-3
Orientation:forward strand
Alignment:---TGATTRATGGCY
AAATGATTTATGGCT
 A C G T A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C
C T G A C G T A C G T A C G A T C T A G C G T A C G A T C G A T C A G T T C G A A G C T C A T G C T A G A G T C G A C T