Information for Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer (Motif 167)

C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A
Reverse Opposite:
A C G T A C G T C G A T A C G T G T C A A C G T C A G T C T A G A T G C G A T C
p-value:1e-876
log p-value:-2.019e+03
FDR:NA
Information Content per bp:1.569
Number of Target Sequences with motif6136.0
Percentage of Target Sequences with motif34.34%
Number of Background Sequences with motif5906.0
Percentage of Background Sequences with motif15.15%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:RGCAATNAAA
RGCAATNAAA
 C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A
C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:2
Score:0.93
Offset:0
Orientation:forward strand
Alignment:RGCAATNAAA
GGCMATGAAA
 C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A
C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:RGCAATNAAA
KGCCATAAAA
 C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A
C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.91
Offset:0
Orientation:forward strand
Alignment:RGCAATNAAA
VGCCATAAAA
 C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A
T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A

CDX2/MA0465.2/Jaspar

Match Rank:5
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-RGCAATNAAA-
AAGCAATAAAAA
 A C G T C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A A C G T
C T G A C G T A C T A G G A T C G T C A C T G A A G C T C G T A C G T A G C T A C G T A G C T A

HOXA10/MA0899.1/Jaspar

Match Rank:6
Score:0.90
Offset:0
Orientation:forward strand
Alignment:RGCAATNAAA-
GGTAATAAAAA
 C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A A C G T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-RGCAATNAAA-
HDGYAATGAAAN
 A C G T C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A A C G T
G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.89
Offset:0
Orientation:forward strand
Alignment:RGCAATNAAA
NGCAATTAAA
 C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

HOXD9/MA0913.2/Jaspar

Match Rank:9
Score:0.89
Offset:1
Orientation:forward strand
Alignment:RGCAATNAAA-
-GCAATAAAAC
 C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A A C G T
A C G T T C A G A G T C G T C A T C G A C G A T G C T A C G T A C G T A G T C A G A T C

ftz/dmmpmm(SeSiMCMC)/fly

Match Rank:10
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:RGCAATNAAA
GNCCATTAA-
 C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A
C T A G A T C G G T A C G T A C G C T A A C G T G C A T C G T A C T G A A C G T