Information for HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer (Motif 166)

T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T
Reverse Opposite:
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C
p-value:1e-940
log p-value:-2.166e+03
FDR:NA
Information Content per bp:1.713
Number of Target Sequences with motif1175.0
Percentage of Target Sequences with motif15.51%
Number of Background Sequences with motif430.2
Percentage of Background Sequences with motif1.04%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GYCATCMATCAT
GYCATCMATCAT
 T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:2
Score:0.97
Offset:1
Orientation:reverse strand
Alignment:GYCATCMATCAT
-YCATCMATCA-
 T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T
A C G T G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:3
Score:0.93
Offset:1
Orientation:forward strand
Alignment:GYCATCMATCAT
-TCATCAATCA-
 T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T
A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:4
Score:0.93
Offset:0
Orientation:forward strand
Alignment:GYCATCMATCAT-
GTCATCAATCATT
 T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T
C T A G G A C T G A T C C T G A C A G T G T A C G T C A G C T A G C A T G T A C G C T A G C A T G C A T

LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer

Match Rank:5
Score:0.93
Offset:2
Orientation:reverse strand
Alignment:GYCATCMATCAT
--CATYAATCAT
 T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T
A C G T A C G T G T A C C G T A C G A T G A T C G C T A C T G A A C G T G A T C C G T A G C A T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:6
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-GYCATCMATCAT
RGCCATYAATCA-
 A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T

PBX1/MA0070.1/Jaspar

Match Rank:7
Score:0.89
Offset:1
Orientation:forward strand
Alignment:GYCATCMATCAT-
-CCATCAATCAAA
 T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T
A C G T G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:GYCATCMATCAT
NCYATMAATCAY
 T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T
T A C G G A T C G A T C C T G A A G C T G T C A G C T A T C G A C G A T G A T C G C T A G A C T

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:9
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-GYCATCMATCAT--
NNCCATAAATCATNN
 A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T
C T G A T C A G G A T C G T A C T C G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G C A T G C A T G A C T

HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer

Match Rank:10
Score:0.83
Offset:3
Orientation:reverse strand
Alignment:GYCATCMATCAT
---WTCCATCA-
 T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T
A C G T A C G T A C G T G C A T A C G T A G T C A G T C C G T A A C G T A G T C C G T A A C G T