Information for HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer (Motif 165)

C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G
Reverse Opposite:
G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A
p-value:1e-817
log p-value:-1.882e+03
FDR:NA
Information Content per bp:1.725
Number of Target Sequences with motif1188.0
Percentage of Target Sequences with motif10.80%
Number of Background Sequences with motif355.8
Percentage of Background Sequences with motif0.94%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:TGATKGATGR
TGATKGATGR
 C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G
C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:2
Score:0.97
Offset:-1
Orientation:reverse strand
Alignment:-TGATKGATGR-
ATGATKGATGRC
 A C G T C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G A C G T
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:3
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:TGATKGATGR
TGATTGATGA
 C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G
C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:4
Score:0.94
Offset:-2
Orientation:reverse strand
Alignment:--TGATKGATGR-
NNTGATTGATGNN
 A C G T A C G T C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G A C G T
C G T A C G T A C G A T C A T G C G T A C G A T C A G T C A T G G T C A G A C T C T A G C T G A G A T C

LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer

Match Rank:5
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-TGATKGATGR
ATGATTRATG-
 A C G T C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G
C G T A C G A T C T A G G T C A G A C T C G A T C T A G C G T A A C G T C A T G A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:6
Score:0.92
Offset:0
Orientation:forward strand
Alignment:TGATKGATGR--
TGATTRATGGCY
 C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G A C G T A C G T
C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

PBX1/MA0070.1/Jaspar

Match Rank:7
Score:0.91
Offset:-2
Orientation:reverse strand
Alignment:--TGATKGATGR
TTTGATTGATGN
 A C G T A C G T C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-TGATKGATGR-
RTGATTKATRGN
 A C G T C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G A C G T
C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C

PB0144.1_Lef1_2/Jaspar

Match Rank:9
Score:0.84
Offset:-4
Orientation:reverse strand
Alignment:----TGATKGATGR--
NNANTGATTGATNTTN
 A C G T A C G T A C G T A C G T C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G A C G T A C G T
G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C

HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer

Match Rank:10
Score:0.84
Offset:0
Orientation:forward strand
Alignment:TGATKGATGR
TGATGGAW--
 C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G
A C G T A C T G C G T A A C G T A C T G A C T G C G T A C G T A A C G T A C G T