Information for Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer (Motif 164)

T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C
Reverse Opposite:
C T A G G C A T A C G T G C A T G A C T C G T A G A C T C A T G C T A G A T C G
p-value:1e-2144
log p-value:-4.937e+03
FDR:NA
Information Content per bp:1.601
Number of Target Sequences with motif12932.0
Percentage of Target Sequences with motif22.45%
Number of Background Sequences with motif4829.7
Percentage of Background Sequences with motif8.74%
Average Position of motif in Targets50.3 +/- 25.9bp
Average Position of motif in Background49.5 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:CYHATAAAAN
CYHATAAAAN
 T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C
T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:2
Score:0.98
Offset:-1
Orientation:forward strand
Alignment:-CYHATAAAAN
NCYAATAAAA-
 A C G T T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C
C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.96
Offset:-1
Orientation:forward strand
Alignment:-CYHATAAAAN
VGCCATAAAA-
 A C G T T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C
T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.96
Offset:-1
Orientation:forward strand
Alignment:-CYHATAAAAN
NCYAATAAAA-
 A C G T T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.95
Offset:-1
Orientation:reverse strand
Alignment:-CYHATAAAAN
KGCCATAAAA-
 A C G T T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C
C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:6
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-CYHATAAAAN
CCYMATAAAA-
 A C G T T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:7
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-CYHATAAAAN-
NGYCATAAAWCH
 A C G T T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-CYHATAAAAN
GGCMATGAAA-
 A C G T T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C
C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:9
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-CYHATAAAAN
NGCAATTAAA-
 A C G T T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T

Abd-B/MA0165.1/Jaspar

Match Rank:10
Score:0.91
Offset:1
Orientation:reverse strand
Alignment:CYHATAAAAN
-TCATAAA--
 T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C
A C G T G A C T G T A C C T G A A C G T C G T A C G T A C G T A A C G T A C G T