Information for Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer (Motif 162)

C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A
Reverse Opposite:
G A C T A G C T G A C T A T G C G C T A A C G T A C G T C T G A A T G C G A T C
p-value:1e-611
log p-value:-1.407e+03
FDR:NA
Information Content per bp:1.595
Number of Target Sequences with motif2193.0
Percentage of Target Sequences with motif11.28%
Number of Background Sequences with motif845.6
Percentage of Background Sequences with motif2.93%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GGYAATGAAA
GGYAATGAAA
 C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A
C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:2
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-GGYAATGAAA-
HDGYAATGAAAN
 A C G T C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A A C G T
G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.93
Offset:0
Orientation:forward strand
Alignment:GGYAATGAAA
GGCMATGAAA
 C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A
C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.86
Offset:0
Orientation:forward strand
Alignment:GGYAATGAAA
RGCAATNAAA
 C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A
C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A

HOXA10/MA0899.1/Jaspar

Match Rank:5
Score:0.81
Offset:0
Orientation:forward strand
Alignment:GGYAATGAAA-
GGTAATAAAAA
 C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A A C G T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.81
Offset:0
Orientation:forward strand
Alignment:GGYAATGAAA
VGCCATAAAA
 C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A
T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A

HOXD9/MA0913.2/Jaspar

Match Rank:7
Score:0.81
Offset:1
Orientation:forward strand
Alignment:GGYAATGAAA-
-GCAATAAAAC
 C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A A C G T
A C G T T C A G A G T C G T C A T C G A C G A T G C T A C G T A C G T A G T C A G A T C

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:GGYAATGAAA
KGCCATAAAA
 C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A
C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A

pal-1/MA0924.1/Jaspar

Match Rank:9
Score:0.80
Offset:1
Orientation:forward strand
Alignment:GGYAATGAAA
-GTAATAAA-
 C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A
A C G T C T A G A G C T G T C A C G T A A C G T C G T A C G T A G T C A A C G T

CG12361/dmmpmm(Noyes_hd)/fly

Match Rank:10
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:GGYAATGAAA-
-GTAATAAAAN
 C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A A C G T
A C G T A T C G A G C T T G C A C G T A A C G T G C T A C G T A C G T A G T C A C G A T