Information for Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer (Motif 16)

T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C
Reverse Opposite:
T C A G T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G C T T G C A A G T C
p-value:1e-2386
log p-value:-5.503e+03
FDR:NA
Information Content per bp:1.657
Number of Target Sequences with motif3441.0
Percentage of Target Sequences with motif59.72%
Number of Background Sequences with motif1043.2
Percentage of Background Sequences with motif2.36%
Average Position of motif in Targets-0.2 +/- 10.8bp
Average Position of motif in Background-0.1 +/- 12.6bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:VNAVCAGCTGGC
VNAVCAGCTGGC
 T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C
T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C

Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer

Match Rank:2
Score:0.96
Offset:1
Orientation:reverse strand
Alignment:VNAVCAGCTGGC
-DRVCAGCTGK-
 T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C
A C G T C A T G C T G A T G C A A G T C C G T A A C T G T G A C A C G T A C T G A C T G A C G T

BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer

Match Rank:3
Score:0.95
Offset:1
Orientation:forward strand
Alignment:VNAVCAGCTGGC
-NAMCAGCTGK-
 T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C
A C G T C T A G T C G A T G A C A G T C C G T A A C T G G T A C A C G T A C T G A C T G A C G T

BHLHA15(var.2)/MA1472.1/Jaspar

Match Rank:4
Score:0.95
Offset:2
Orientation:reverse strand
Alignment:VNAVCAGCTGGC
--NACAGCTGTT
 T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C
A C G T A C G T T C G A T C G A A G T C C G T A A C T G T G A C C G A T C A T G A C G T A G C T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:5
Score:0.94
Offset:0
Orientation:forward strand
Alignment:VNAVCAGCTGGC
NNVVCAGCTGBN
 T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C
C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T

TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer

Match Rank:6
Score:0.93
Offset:2
Orientation:reverse strand
Alignment:VNAVCAGCTGGC
--DMCAGATGKS
 T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C
A C G T A C G T C G T A T G A C A G T C C G T A A C T G G T C A A C G T A C T G A C G T A T G C

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:7
Score:0.93
Offset:2
Orientation:reverse strand
Alignment:VNAVCAGCTGGC
--AACAKATGGY
 T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C
A C G T A C G T C T G A T G C A A G T C T C G A A C T G T G C A G C A T A C T G A C T G G A C T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.92
Offset:2
Orientation:reverse strand
Alignment:VNAVCAGCTGGC
--AACAGATGGC
 T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C
A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:9
Score:0.91
Offset:2
Orientation:reverse strand
Alignment:VNAVCAGCTGGC
--AACAGATGGT
 T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C
A C G T A C G T T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T

PL0006.1_hlh-2::lin-32/Jaspar

Match Rank:10
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-VNAVCAGCTGGC---
NNNAACAGCTGTTNNN
 A C G T T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C A C G T A C G T A C G T
A T C G C T G A C A T G T C G A T G C A G T A C C T G A A C T G T G A C A G C T A C T G A C G T A C G T G A T C A C G T C A G T