Information for HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer (Motif 154)

C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C
Reverse Opposite:
C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C
p-value:1e-393
log p-value:-9.052e+02
FDR:NA
Information Content per bp:1.684
Number of Target Sequences with motif627.0
Percentage of Target Sequences with motif25.42%
Number of Background Sequences with motif1198.3
Percentage of Background Sequences with motif2.77%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GCACGTACCC
GCACGTACCC
 C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C
C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:2
Score:0.97
Offset:0
Orientation:reverse strand
Alignment:GCACGTACCC
GCACGTAY--
 C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:3
Score:0.96
Offset:-1
Orientation:reverse strand
Alignment:-GCACGTACCC
BGCACGTA---
 A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C
A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:4
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:GCACGTACCC
GCACGTNC--
 C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C
A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T A C G T

HIF1A/MA1106.1/Jaspar

Match Rank:5
Score:0.94
Offset:-2
Orientation:reverse strand
Alignment:--GCACGTACCC
NNGCACGTNC--
 A C G T A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C
T A C G T A C G C A T G A G T C T C G A A G T C C T A G G A C T T C G A A T G C A C G T A C G T

BIM3/MA0966.1/Jaspar

Match Rank:6
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-GCACGTACCC
AGCACGTGCT-
 A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C
C T G A A C T G G A T C C G T A G A T C C T A G G C A T C T A G T G A C G A C T A C G T

BIM1/MA0964.1/Jaspar

Match Rank:7
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--GCACGTACCC
NNNCACGTGN--
 A C G T A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C
A C T G T C A G C A G T G T A C C T G A A G T C C T A G G A C T C A T G T A G C A C G T A C G T

Arnt/MA0004.1/Jaspar

Match Rank:8
Score:0.83
Offset:1
Orientation:reverse strand
Alignment:GCACGTACCC
-CACGTG---
 C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C
A C G T A G T C C G T A A G T C A C T G A G C T A C T G A C G T A C G T A C G T

BEE2/MA0956.1/Jaspar

Match Rank:9
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-GCACGTACCC
AGCACGTGCT-
 A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C
G C T A A T C G G T A C C G T A G A T C C T A G G C A T C A T G T A G C C G A T A C G T

HAC1/MA0310.1/Jaspar

Match Rank:10
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-GCACGTACCC
GACACGTG---
 A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C
C T A G G T C A A G T C C G T A A G T C A C T G A C G T T C A G A C G T A C G T A C G T