Information for HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer (Motif 152)

A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C
Reverse Opposite:
A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A
p-value:1e-276
log p-value:-6.373e+02
FDR:NA
Information Content per bp:1.697
Number of Target Sequences with motif341.0
Percentage of Target Sequences with motif31.40%
Number of Background Sequences with motif42.8
Percentage of Background Sequences with motif2.30%
Average Position of motif in Targets102.1 +/- 40.3bp
Average Position of motif in Background89.3 +/- 78.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:TACGTGCV
TACGTGCV
 A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C
A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:2
Score:0.97
Offset:-1
Orientation:forward strand
Alignment:-TACGTGCV
RTACGTGC-
 A C G T A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C
C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T

HIF1A/MA1106.1/Jaspar

Match Rank:3
Score:0.97
Offset:-1
Orientation:forward strand
Alignment:-TACGTGCV-
GTACGTGCCC
 A C G T A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C A C G T
T A C G A G C T C G T A A G T C C T A G A G C T T C A G G T A C A T G C A T G C

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:4
Score:0.96
Offset:-3
Orientation:reverse strand
Alignment:---TACGTGCV
GGGTACGTGC-
 A C G T A C G T A C G T A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C
C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:5
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-TACGTGCV
GGACGTGC-
 A C G T A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C
T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T

BIM3/MA0966.1/Jaspar

Match Rank:6
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--TACGTGCV
AGCACGTGCT
 A C G T A C G T A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C
C T G A A C T G G A T C C G T A G A T C C T A G G C A T C T A G T G A C G A C T

HBI1/MA1025.1/Jaspar

Match Rank:7
Score:0.85
Offset:-2
Orientation:reverse strand
Alignment:--TACGTGCV--
NGCACGTGCNNN
 A C G T A C G T A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C A C G T A C G T
C G T A A C T G A G T C C G T A A G T C C T A G A C G T A C T G T G A C T G A C A G T C A C T G

SOHLH2/MA1560.1/Jaspar

Match Rank:8
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--TACGTGCV
CGCACGTGCA
 A C G T A C G T A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C
G A T C A C T G G A T C C T G A A T G C C A T G G A C T C T A G T G A C T C G A

BEE2/MA0956.1/Jaspar

Match Rank:9
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--TACGTGCV
AGCACGTGCT
 A C G T A C G T A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C
G C T A A T C G G T A C C G T A G A T C C T A G G C A T C A T G T A G C C G A T

BIM1/MA0964.1/Jaspar

Match Rank:10
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-TACGTGCV-
GCACGTGACC
 A C G T A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C A C G T
A C T G G T A C C T G A G A T C T C A G G A C T C A T G G T C A A G T C T A G C