Information for GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer (Motif 148)

T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G
Reverse Opposite:
G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C
p-value:1e-1070
log p-value:-2.465e+03
FDR:NA
Information Content per bp:1.681
Number of Target Sequences with motif4274.0
Percentage of Target Sequences with motif31.18%
Number of Background Sequences with motif3421.6
Percentage of Background Sequences with motif9.61%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:RGGATTAR
RGGATTAR
 T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G
T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G

Gsc/dmmpmm(Noyes)/fly

Match Rank:2
Score:0.98
Offset:1
Orientation:forward strand
Alignment:RGGATTAR
-GGATTA-
 T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G
A C G T T C A G A C T G C G T A A C G T A C G T C G T A A C G T

Gsc/MA0190.1/Jaspar

Match Rank:3
Score:0.98
Offset:1
Orientation:reverse strand
Alignment:RGGATTAR
-GGATTA-
 T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G
A C G T T C A G A C T G C G T A A C G T A C G T C G T A A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:4
Score:0.98
Offset:-1
Orientation:reverse strand
Alignment:-RGGATTAR-
VRGGATTARN
 A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

PITX3/MA0714.1/Jaspar

Match Rank:5
Score:0.98
Offset:0
Orientation:reverse strand
Alignment:RGGATTAR-
GGGATTANN
 T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T
C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

GSC/MA0648.1/Jaspar

Match Rank:6
Score:0.98
Offset:-1
Orientation:reverse strand
Alignment:-RGGATTAR-
NNGGATTAGN
 A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T
C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C

unc-30/MA1443.1/Jaspar

Match Rank:7
Score:0.98
Offset:0
Orientation:reverse strand
Alignment:RGGATTAR
NGGATTAN
 T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G
C T A G C T A G A C T G C G T A A C G T A C G T C G T A C G T A

PITX1/MA0682.2/Jaspar

Match Rank:8
Score:0.98
Offset:0
Orientation:reverse strand
Alignment:RGGATTAR
NGGATTAN
 T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G
C A T G T C A G C A T G G T C A A C G T A C G T C G T A C T A G

GSC2/MA0891.1/Jaspar

Match Rank:9
Score:0.98
Offset:-1
Orientation:reverse strand
Alignment:-RGGATTAR-
GNGGATTAGN
 A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T
C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G

Gsc/dmmpmm(Noyes_hd)/fly

Match Rank:10
Score:0.97
Offset:0
Orientation:reverse strand
Alignment:RGGATTAR--
NGGATTAANN
 T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T
T C G A T C A G A C T G C G T A A C G T A C G T C G T A C T G A A C G T C T G A