Information for GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer (Motif 146)

T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C
Reverse Opposite:
C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G
p-value:1e-1755
log p-value:-4.041e+03
FDR:NA
Information Content per bp:1.607
Number of Target Sequences with motif1437.0
Percentage of Target Sequences with motif71.35%
Number of Background Sequences with motif1197.7
Percentage of Background Sequences with motif2.63%
Average Position of motif in Targets101.8 +/- 27.3bp
Average Position of motif in Background98.0 +/- 69.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:VAGRACAKWCTGTYC
VAGRACAKWCTGTYC
 T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:2
Score:0.98
Offset:0
Orientation:forward strand
Alignment:VAGRACAKWCTGTYC
VAGRACAKNCTGTBC
 T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:3
Score:0.97
Offset:0
Orientation:forward strand
Alignment:VAGRACAKWCTGTYC
AAGAACATWHTGTTC
 T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C
C G T A C T G A C T A G C G T A C G T A A G T C C G T A C A G T G C A T G T C A C G A T A C T G A C G T G C A T G A T C

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.97
Offset:0
Orientation:forward strand
Alignment:VAGRACAKWCTGTYC-
NAGNACANNNTGTNCT
 T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C A C G T
T A C G C T G A C T A G T C G A C G T A A G T C C T G A A T C G G C A T T A G C G A C T A C T G A C G T A G C T A G T C G A C T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:VAGRACAKWCTGTYC-
NAGAACAGNCTGTNCT
 T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C A C G T
T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T

NR3C2/MA0727.1/Jaspar

Match Rank:6
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:VAGRACAKWCTGTYC--
GGGAACATTGTGTTCCC
 T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C A C G T A C G T
C A T G T C A G C T A G C G T A C T G A A T G C C T G A G A C T G C A T C T A G G A C T A T C G A C G T G C A T G T A C G A T C G T A C

NR3C1/MA0113.3/Jaspar

Match Rank:7
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:VAGRACAKWCTGTYC--
NGGAACATNATGTACCC
 T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C A C G T A C G T
C A T G C T A G C T A G C G T A T G C A T A G C C T G A G A C T G C A T C T G A G A C T A T C G G C A T G C T A G A T C G A T C G A T C

Ar/MA0007.3/Jaspar

Match Rank:8
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:VAGRACAKWCTGTYC--
NGGTACACNGTGTTCCC
 T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C A C G T A C G T
C T A G C T A G C T A G G C A T C G T A T A G C C T G A A G T C A T G C T C A G A G C T A T C G A C G T C G A T G A T C G A T C G A T C

Ot_0263(RRM)/Ostreococcus_tauri-RNCMPT00263-PBM/HughesRNA

Match Rank:9
Score:0.65
Offset:1
Orientation:forward strand
Alignment:VAGRACAKWCTGTYC
-AGAACAA-------
 T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C
A C G T C G T A A C T G C G T A C G T A A G T C C T G A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--VAGRACAKWCTGTYC
CCAGGAACAG-------
 A C G T A C G T T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T