Information for GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer (Motif 144)

T A G C G C A T A G T C G A T C A T G C G A C T C T A G A C T G A C T G C T G A A C T G C T A G A G T C T G A C C G A T
Reverse Opposite:
G C T A A C T G T C A G G A T C A G T C G A C T A G T C G T A C G A T C C T G A T A C G C T A G T C A G C G T A A T C G
p-value:1e-609
log p-value:-1.404e+03
FDR:NA
Information Content per bp:1.600
Number of Target Sequences with motif3440.0
Percentage of Target Sequences with motif20.60%
Number of Background Sequences with motif2510.0
Percentage of Background Sequences with motif7.66%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:CTCCCTGGGAGGCCN
CTCCCTGGGAGGCCN
 T A G C G C A T A G T C G A T C A T G C G A C T C T A G A C T G A C T G C T G A A C T G C T A G A G T C T G A C C G A T
T A G C G C A T A G T C G A T C A T G C G A C T C T A G A C T G A C T G C T G A A C T G C T A G A G T C T G A C C G A T

ZIC4/MA0751.1/Jaspar

Match Rank:2
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-CTCCCTGGGAGGCCN
NCNCAGCGGGGGGTC-
 A C G T T A G C G C A T A G T C G A T C A T G C G A C T C T A G A C T G A C T G C T G A A C T G C T A G A G T C T G A C C G A T
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T

Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer

Match Rank:3
Score:0.76
Offset:3
Orientation:forward strand
Alignment:CTCCCTGGGAGGCCN
---YSTGGGTGGTCT
 T A G C G C A T A G T C G A T C A T G C G A C T C T A G A C T G A C T G C T G A A C T G C T A G A G T C T G A C C G A T
A C G T A C G T A C G T A G T C A T C G G C A T C A T G A C T G A T C G C G A T C T A G A C T G A G C T T G A C G A C T

GLIS2/MA0736.1/Jaspar

Match Rank:4
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CTCCCTGGGAGGCCN
CTTCGCGGGGGGTC-
 T A G C G C A T A G T C G A T C A T G C G A C T C T A G A C T G A C T G C T G A A C T G C T A G A G T C T G A C C G A T
T A G C C A G T G A C T G A T C T C A G G A T C C T A G C A T G A C T G C T A G C A T G C T A G A G C T T G A C A C G T

opa/dmmpmm(Noyes)/fly

Match Rank:5
Score:0.73
Offset:2
Orientation:forward strand
Alignment:CTCCCTGGGAGGCCN
--CAGCGGGGGGTC-
 T A G C G C A T A G T C G A T C A T G C G A C T C T A G A C T G A C T G C T G A A C T G C T A G A G T C T G A C C G A T
A C G T A C G T A G T C G T C A T C A G G A T C C T A G A C T G A C T G A C T G C T A G A T C G A C G T T G A C A C G T

opa/MA0456.1/Jaspar

Match Rank:6
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:CTCCCTGGGAGGCCN
--CAGCGGGGGGTC-
 T A G C G C A T A G T C G A T C A T G C G A C T C T A G A C T G A C T G C T G A A C T G C T A G A G T C T G A C C G A T
A C G T A C G T A G T C G T C A T A C G G A T C C T A G A C T G A C T G T A C G A C T G C A T G A C G T T G A C A C G T

HNRNPH2(RRM)/Homo_sapiens-RNCMPT00160-PBM/HughesRNA

Match Rank:7
Score:0.72
Offset:6
Orientation:forward strand
Alignment:CTCCCTGGGAGGCCN
------GGGAGGG--
 T A G C G C A T A G T C G A T C A T G C G A C T C T A G A C T G A C T G C T G A A C T G C T A G A G T C T G A C C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A T C G A T C G T C A G C G T A A C T G A T C G T C A G A C G T A C G T

GLI3/MA1491.1/Jaspar

Match Rank:8
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CTCCCTGGGAGGCCN
CGNCGTGGGTGGTCN
 T A G C G C A T A G T C G A T C A T G C G A C T C T A G A C T G A C T G C T G A A C T G C T A G A G T C T G A C C G A T
T A G C C T A G G C T A A T G C C A T G A G C T C A T G C A T G A T C G C A G T A C T G A C T G A C G T T G A C A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:9
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CTCCCTGGGAGGCCN
NCGCAGCGGGGGGTC-
 A C G T T A G C G C A T A G T C G A T C A T G C G A C T C T A G A C T G A C T G C T G A A C T G C T A G A G T C T G A C C G A T
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T

PB0102.1_Zic2_1/Jaspar

Match Rank:10
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--CTCCCTGGGAGGCCN
ACCCCCCCGGGGGGN--
 A C G T A C G T T A G C G C A T A G T C G A T C A T G C G A C T C T A G A C T G A C T G C T G A A C T G C T A G A G T C T G A C C G A T
T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G A C G T A C G T