Information for FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer (Motif 126)

T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C
Reverse Opposite:
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T
p-value:
log p-value:-1.228e+03
FDR:0.000
Information Content per bp:1.611
Number of Target Sequences with motif
Percentage of Target Sequences with motif
Number of Background Sequences with motif
Percentage of Background Sequences with motif
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:AGGTCANTGACCTN
AGGTCANTGACCTN
 T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

NR2F6(var.3)/MA1539.1/Jaspar

Match Rank:2
Score:0.95
Offset:-1
Orientation:reverse strand
Alignment:-AGGTCANTGACCTN
AAGGTCANTGACCTT
 A C G T T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C
C T G A T C G A C A T G C A T G A C G T A G T C T C G A T A C G G A C T T C A G T G C A G T A C G T A C A G C T G A C T

NR2F1(var.3)/MA1538.1/Jaspar

Match Rank:3
Score:0.95
Offset:-1
Orientation:reverse strand
Alignment:-AGGTCANTGACCTN
AAGGTCANTGACCTT
 A C G T T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C
C T G A C T G A A C T G T C A G A C G T A G T C T C G A T G C A A G C T T C A G T G C A G A T C T G A C G A C T G A C T

NR1H4::RXRA/MA1146.1/Jaspar

Match Rank:4
Score:0.94
Offset:-1
Orientation:reverse strand
Alignment:-AGGTCANTGACCTN
NAGGTCAATGACCTC
 A C G T T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C
T C G A T C G A C A T G C A T G A C G T A G T C T C G A C G T A G A C T T C A G T G C A G T A C G A T C A G C T A G T C

NR4A2::RXRA/MA1147.1/Jaspar

Match Rank:5
Score:0.94
Offset:-1
Orientation:reverse strand
Alignment:-AGGTCANTGACCTN
GGGGTCAATGACCTN
 A C G T T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C
T C A G T C A G C A T G C A T G A C G T A T G C T C G A G C T A A G C T T C A G T C G A G T A C G T A C A G C T A G T C

EcR/usp/dmmpmm(Bergman)/fly

Match Rank:6
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-AGGTCANTGACCTN
GAGGTCAATGACCTC
 A C G T T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C
T C A G T C G A A C T G A C T G A C G T A G T C C G T A C G T A A G C T C T A G T C G A G T A C G T A C A G C T A G T C

EcR::usp/MA0534.1/Jaspar

Match Rank:7
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-AGGTCANTGACCTN
AAGGTCAATGAACTN
 A C G T T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C
C T G A C T G A C T A G A C T G C A G T A G T C C G T A C G T A A G C T C T A G C G T A G T C A A G T C A G C T A T G C

NR1H4/MA1110.1/Jaspar

Match Rank:8
Score:0.78
Offset:3
Orientation:forward strand
Alignment:AGGTCANTGACCTN
---TCAATGACCTA
 T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C
A C G T A C G T A C G T A C G T A G T C C G T A C T G A A G C T C T A G G T C A G T A C G T A C A G C T G C T A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AGGTCANTGACCTN
AGGTCA--------
 T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NR2C1/MA1535.1/Jaspar

Match Rank:10
Score:0.68
Offset:6
Orientation:reverse strand
Alignment:AGGTCANTGACCTN-
------NTGACCTCN
 T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G C T A T C G G T C A A G T C G T A C A G C T G A T C C A T G